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  5. Brara.I01777.1

Brara.I01777.1


Description : SBP-type transcription factor


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01777.1
Cluster HCAA Clusters: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
At5g43270 No alias Squamosa promoter-binding-like protein 2... 0.04 Orthogroups_2024-Update
Brara.F00135.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G01764.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G097275 No alias squamosa promoter binding protein-like 2 0.02 Orthogroups_2024-Update
Glyma.03G143100 No alias squamosa promoter binding protein-like 9 0.04 Orthogroups_2024-Update
Glyma.13G177400 No alias squamosa promoter binding protein-like 3 0.03 Orthogroups_2024-Update
Glyma.18G005600 No alias squamosa promoter binding protein-like 2 0.04 Orthogroups_2024-Update
Glyma.19G094000 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
PSME_00047223-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.015G060400 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Solyc05g015840 No alias Squamosa promoter binding protein 13 0.03 Orthogroups_2024-Update
Sopen05g011450 No alias SBP domain 0.03 Orthogroups_2024-Update
Sopen10g029320 No alias SBP domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Predicted GO
BP GO:0046855 inositol phosphate dephosphorylation IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071545 inositol phosphate catabolic process IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 156 229
No external refs found!