1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I01830.1

Brara.I01830.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01830.1
Cluster HCAA Clusters: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
A4A49_25017 No alias abc transporter b family member 9 0.03 Orthogroups_2024-Update
Bradi2g17710 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Bradi2g47347 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Brara.I00328.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.K00170.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G025860 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
GRMZM2G315375 No alias ATP binding cassette subfamily B1 0.03 Orthogroups_2024-Update
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Glyma.08G342600 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.16G078100 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
Glyma.17G041300 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
LOC_Os01g74470 No alias ABC transporter, ATP-binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g54930 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_111099g0010 No alias (at3g28345 : 1122.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
PSME_00005534-RA No alias (at3g62150 : 1137.0) P-glycoprotein 21 (PGP21);... 0.04 Orthogroups_2024-Update
PSME_00023484-RA No alias (at2g36910 : 1766.0) Belongs to the family of... 0.04 Orthogroups_2024-Update
Potri.001G417600 No alias ABC transporter family protein 0.04 Orthogroups_2024-Update
Potri.002G019600 No alias P-glycoprotein 13 0.03 Orthogroups_2024-Update
Potri.003G094400 No alias P-glycoprotein 2 0.02 Orthogroups_2024-Update
Potri.010G003000 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Potri.011G133800 No alias P-glycoprotein 18 0.04 Orthogroups_2024-Update
Seita.1G055700.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc02g087410 No alias ABC transporter B family protein (AHRD V3.3 *** G7KJX5_MEDTR) 0.03 Orthogroups_2024-Update
Solyc06g009290 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.04 Orthogroups_2024-Update
Sopen03g040850 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update
Sopen12g023550 No alias ABC transporter 0.03 Orthogroups_2024-Update
evm.model.tig00000741.4 No alias (at3g62150 : 432.0) P-glycoprotein 21 (PGP21); FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 962 1112
IPR011527 ABC1_TM_dom 622 882
IPR011527 ABC1_TM_dom 23 289
IPR003439 ABC_transporter-like 350 467
No external refs found!