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  5. Brara.I01850.1

Brara.I01850.1


Description : component *(VPS2/CHMP2) of ESCRT-III complex


Gene families : OG_42_0001019 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001019_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01850.1
Cluster HCAA Clusters: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
266789 No alias vacuolar protein sorting-associated protein 2.3 0.04 Orthogroups_2024-Update
A4A49_21866 No alias vacuolar protein sorting-associated protein 2-like 2 0.05 Orthogroups_2024-Update
At5g44560 No alias Vacuolar protein sorting-associated protein 2 homolog 2... 0.06 Orthogroups_2024-Update
Bradi4g09340 No alias SNF7 family protein 0.02 Orthogroups_2024-Update
Brara.F03732.1 No alias component *(VPS2/CHMP2) of ESCRT-III complex 0.03 Orthogroups_2024-Update
Glyma.15G192100 No alias SNF7 family protein 0.08 Orthogroups_2024-Update
Glyma.17G051000 No alias SNF7 family protein 0.03 Orthogroups_2024-Update
Pp1s1_598V6 No alias charged multivesicular body protein 2a 0.02 Orthogroups_2024-Update
Solyc02g069680 No alias Vacuolar protein sorting-associated protein 2 homolog 2... 0.15 Orthogroups_2024-Update
Sopen02g018800 No alias Snf7 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005024 Snf7_fam 17 185
No external refs found!