1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I01920.1

Brara.I01920.1


Description : Unknown function


Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01920.1
Cluster HCAA Clusters: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
At1g15890 No alias Probable disease resistance protein At1g15890... 0.05 Orthogroups_2024-Update
At4g27190 No alias Disease resistance protein At4g27190... 0.03 Orthogroups_2024-Update
Brara.I01184.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I03376.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G032602 No alias NB-ARC domain-containing disease resistance protein 0.05 Orthogroups_2024-Update
MA_53162g0020 No alias (at5g43740 : 114.0) Disease resistance protein... 0.05 Orthogroups_2024-Update
PSME_00009855-RA No alias (at1g12280 : 248.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
PSME_00011883-RA No alias (at4g27220 : 218.0) NB-ARC domain-containing disease... 0.02 Orthogroups_2024-Update
PSME_00037873-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00045398-RA No alias (at1g12280 : 140.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
PSME_00056619-RA No alias (at4g27220 : 229.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00056885-RA No alias (at4g27220 : 223.0) NB-ARC domain-containing disease... 0.05 Orthogroups_2024-Update
Potri.011G124100 No alias NB-ARC domain-containing disease resistance protein 0.04 Orthogroups_2024-Update
Potri.T013900 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Potri.T024900 No alias NB-ARC domain-containing disease resistance protein 0.04 Orthogroups_2024-Update
Potri.T025230 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Potri.T026800 No alias LRR and NB-ARC domains-containing disease resistance protein 0.02 Orthogroups_2024-Update
Potri.T028700 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Potri.T045200 No alias LRR and NB-ARC domains-containing disease resistance protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0043531 ADP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEP Predicted GO
BP GO:0001682 tRNA 5'-leader removal IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034471 ncRNA 5'-end processing IEP Predicted GO
BP GO:0099116 tRNA 5'-end processing IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 231 291
IPR002182 NB-ARC 1 94
No external refs found!