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  5. Brara.I01939.1

Brara.I01939.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01939.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
230688 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
A4A49_00814 No alias abc transporter b family member 4 0.03 Orthogroups_2024-Update
Bradi5g13617 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
Brara.G00386.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Glyma.18G154200 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
LOC_Os04g40570 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10432169g0010 No alias (at2g47000 : 1463.0) Multidrug resistance ... 0.03 Orthogroups_2024-Update
MA_6870g0010 No alias (q6yuu5|mdr_orysa : 1284.0) Putative multidrug... 0.03 Orthogroups_2024-Update
Mp2g02920.1 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 Orthogroups_2024-Update
PSME_00023263-RA No alias (q6yuu5|mdr_orysa : 1044.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00023264-RA No alias (q6yuu5|mdr_orysa : 1318.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00031965-RA No alias (q6yuu5|mdr_orysa : 1268.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00035545-RA No alias (q6yuu5|mdr_orysa : 1259.0) Putative multidrug... 0.02 Orthogroups_2024-Update
PSME_00038380-RA No alias (q6yuu5|mdr_orysa : 1204.0) Putative multidrug... 0.05 Orthogroups_2024-Update
PSME_00039058-RA No alias (q6yuu5|mdr_orysa : 1225.0) Putative multidrug... 0.04 Orthogroups_2024-Update
Potri.001G417600 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Potri.006G074000 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Potri.006G074100 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Potri.008G050400 No alias P-glycoprotein 20 0.03 Orthogroups_2024-Update
Potri.010G210100 No alias P-glycoprotein 20 0.03 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.04 Orthogroups_2024-Update
Potri.018G141400 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Seita.1G145300.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Seita.3G054200.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Solyc03g122070 No alias ABC transporter B family-like protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc06g009280 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.03 Orthogroups_2024-Update
Solyc06g072960 No alias No description available 0.03 Orthogroups_2024-Update
Sopen02g032160 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update
evm.model.contig_618.5 No alias (at2g47000 : 919.0) Multidrug resistance P-glycoprotein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009606 tropism IEP Predicted GO
BP GO:0010274 hydrotropism IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 36 295
IPR011527 ABC1_TM_dom 659 930
IPR003439 ABC_transporter-like 1018 1164
IPR003439 ABC_transporter-like 366 512
No external refs found!