1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I01958.1

Brara.I01958.1


Description : HD-ZIP IV-type transcription factor


Gene families : OG_42_0000114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01958.1
Cluster HCAA Clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
HORVU0Hr1G013510.1 No alias HD-ZIP IV-type transcription factor 0.03 Orthogroups_2024-Update
Solyc03g098200 No alias Homeobox-leucine zipper family protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc08g076370 No alias Homeobox-leucine zipper family protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen02g024970 No alias START domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0008289 lipid binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 324 550
IPR001356 Homeobox_dom 113 168
No external refs found!