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  5. Brara.I01961.1

Brara.I01961.1


Description : histone demethylase *(PKDM8)


Gene families : OG_42_0003007 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003007_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01961.1
Cluster HCAA Clusters: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
Glyma.20G002301 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEP Predicted GO
BP GO:0001682 tRNA 5'-leader removal IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
BP GO:0034471 ncRNA 5'-end processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0099116 tRNA 5'-end processing IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003349 JmjN 89 121
IPR004198 Znf_C5HC2 485 536
IPR003347 JmjC_dom 265 388
No external refs found!