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  5. Brara.I02041.1

Brara.I02041.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I02041.1
Cluster HCAA Clusters: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
At1g03840 No alias Uncharacterized protein At1g03840 (Fragment)... 0.04 Orthogroups_2024-Update
At1g55110 No alias Protein indeterminate-domain 7... 0.03 Orthogroups_2024-Update
At2g02070 No alias Protein indeterminate-domain 5, chloroplastic... 0.03 Orthogroups_2024-Update
At5g44160 No alias Zinc finger protein NUTCRACKER... 0.04 Orthogroups_2024-Update
Bradi2g08460 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g18530 No alias indeterminate(ID)-domain 4 0.02 Orthogroups_2024-Update
Brara.C03495.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.F03435.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.F03442.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Brara.H02093.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
GRMZM5G884137 No alias indeterminate(ID)-domain 5 0.02 Orthogroups_2024-Update
Glyma.03G157432 No alias indeterminate(ID)-domain 12 0.03 Orthogroups_2024-Update
Glyma.05G137000 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.08G092300 No alias indeterminate(ID)-domain 14 0.04 Orthogroups_2024-Update
Glyma.12G070300 No alias C2H2-like zinc finger protein 0.05 Orthogroups_2024-Update
Glyma.20G109400 No alias indeterminate(ID)-domain 4 0.03 Orthogroups_2024-Update
Kfl00232_0130 kfl00232_0130_v1.... (at3g50700 : 272.0) zinc finger protein, similar to... 0.02 Orthogroups_2024-Update
MA_10436688g0010 No alias (at1g68130 : 189.0) indeterminate(ID)-domain 14 (IDD14);... 0.03 Orthogroups_2024-Update
PSME_00021589-RA No alias (at1g68130 : 300.0) indeterminate(ID)-domain 14 (IDD14);... 0.03 Orthogroups_2024-Update
Pp1s125_69V6 No alias nucleic acid binding 0.02 Orthogroups_2024-Update
Seita.1G268600.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Sopen01g042900 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update
Sopen03g040470 No alias Zinc finger, C2H2 type 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!