1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I02055.1

Brara.I02055.1


Description : tobamovirus multiplication replication host factor *(TOM1)


Gene families : OG_42_0000984 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000984_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I02055.1
Cluster HCAA Clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
At2g02180 No alias Tobamovirus multiplication protein 3... 0.05 Orthogroups_2024-Update
Cre12.g487250 No alias tobamovirus multiplication 1 0.02 Orthogroups_2024-Update
GRMZM2G020281 No alias tobamovirus multiplication 1 0.04 Orthogroups_2024-Update
GRMZM2G055462 No alias tobamovirus multiplication protein 3 0.02 Orthogroups_2024-Update
Glyma.05G135900 No alias tobamovirus multiplication protein 3 0.03 Orthogroups_2024-Update
Kfl00854_0040 kfl00854_0040_v1.... (at2g02180 : 294.0) Necessary for the efficient... 0.01 Orthogroups_2024-Update
Seita.J003900.1 No alias tobamovirus multiplication replication host factor *(TOM1) 0.03 Orthogroups_2024-Update
Sopen04g003700 No alias Protein of unknown function (DUF1084) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009457 DUF1084 31 302
No external refs found!