Description : component *(uS13) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0001811 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001811_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.I02318.1 | |
Cluster | HCAA Clusters: Cluster_91 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
267619 | No alias | S18 ribosomal protein | 0.13 | Orthogroups_2024-Update | |
A4A49_58029 | No alias | 40s ribosomal protein s18 | 0.03 | Orthogroups_2024-Update | |
Bradi1g05670 | No alias | Ribosomal protein S13/S18 family | 0.14 | Orthogroups_2024-Update | |
Bradi1g55980 | No alias | Ribosomal protein S13/S18 family | 0.06 | Orthogroups_2024-Update | |
Cre06.g272950 | No alias | Ribosomal protein S13/S18 family | 0.13 | Orthogroups_2024-Update | |
GRMZM2G130544 | No alias | Ribosomal protein S13/S18 family | 0.08 | Orthogroups_2024-Update | |
Glyma.02G079000 | No alias | S18 ribosomal protein | 0.06 | Orthogroups_2024-Update | |
Glyma.10G221600 | No alias | Ribosomal protein S13/S18 family | 0.16 | Orthogroups_2024-Update | |
Glyma.10G224200 | No alias | Ribosomal protein S13/S18 family | 0.04 | Orthogroups_2024-Update | |
Glyma.20G169900 | No alias | Ribosomal protein S13/S18 family | 0.06 | Orthogroups_2024-Update | |
HORVU5Hr1G104720.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
Kfl00001_0620 | kfl00001_0620_v1.1 | (at4g09800 : 247.0) encodes a ribosomal protein S18C, a... | 0.08 | Orthogroups_2024-Update | |
LOC_Os07g07709 | No alias | ribosomal protein S13p/S18e, putative, expressed | 0.04 | Orthogroups_2024-Update | |
MA_10429265g0010 | No alias | (at4g09800 : 256.0) encodes a ribosomal protein S18C, a... | 0.08 | Orthogroups_2024-Update | |
Mp1g07420.1 | No alias | component RPS18 of SSU proteome | 0.06 | Orthogroups_2024-Update | |
Mp5g02820.1 | No alias | component RPS18 of SSU proteome | 0.07 | Orthogroups_2024-Update | |
Potri.002G051300 | No alias | Ribosomal protein S13/S18 family | 0.08 | Orthogroups_2024-Update | |
Potri.005G211200 | No alias | Ribosomal protein S13/S18 family | 0.08 | Orthogroups_2024-Update | |
Pp1s14_433V6 | No alias | 40s ribosomal protein s18 | 0.07 | Orthogroups_2024-Update | |
Pp1s215_71V6 | No alias | 40s ribosomal protein s18 | 0.24 | Orthogroups_2024-Update | |
Pp1s215_81V6 | No alias | 40s ribosomal protein s18 | 0.16 | Orthogroups_2024-Update | |
Pp1s242_94V6 | No alias | 40s ribosomal protein s18 | 0.04 | Orthogroups_2024-Update | |
Seita.2G048400.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Seita.5G053700.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
Sobic.001G058900.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.16 | Orthogroups_2024-Update | |
Sobic.002G049300.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.15 | Orthogroups_2024-Update | |
Solyc03g078290 | No alias | Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS) | 0.17 | Orthogroups_2024-Update | |
Solyc06g073370 | No alias | Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS) | 0.09 | Orthogroups_2024-Update | |
Sopen03g021040 | No alias | Ribosomal protein S13/S18 | 0.11 | Orthogroups_2024-Update | |
Sopen06g029750 | No alias | Ribosomal protein S13/S18 | 0.06 | Orthogroups_2024-Update | |
Sopen11g001640 | No alias | Ribosomal protein S13/S18 | 0.05 | Orthogroups_2024-Update | |
evm.model.contig_2176.2 | No alias | (at4g09800 : 195.0) encodes a ribosomal protein S18C, a... | 0.23 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | 16Dec |
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
None | Extended |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
MF | GO:0004146 | dihydrofolate reductase activity | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006760 | folic acid-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0009396 | folic acid-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Predicted GO |
MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0046653 | tetrahydrofolate metabolic process | IEP | Predicted GO |
BP | GO:0046654 | tetrahydrofolate biosynthetic process | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001892 | Ribosomal_S13 | 14 | 142 |
No external refs found! |