Brara.I02440.1

Description : component *(uS13) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001811 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001811_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I02440.1
Cluster	HCAA Clusters: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
267619	No alias	S18 ribosomal protein	0.23	Orthogroups_2024-Update
A4A49_58029	No alias	40s ribosomal protein s18	0.07	Orthogroups_2024-Update
Bradi1g05670	No alias	Ribosomal protein S13/S18 family	0.2	Orthogroups_2024-Update
Bradi1g55980	No alias	Ribosomal protein S13/S18 family	0.09	Orthogroups_2024-Update
Cre06.g272950	No alias	Ribosomal protein S13/S18 family	0.23	Orthogroups_2024-Update
GRMZM2G130544	No alias	Ribosomal protein S13/S18 family	0.13	Orthogroups_2024-Update
Glyma.02G079000	No alias	S18 ribosomal protein	0.05	Orthogroups_2024-Update
Glyma.10G221600	No alias	Ribosomal protein S13/S18 family	0.24	Orthogroups_2024-Update
Glyma.10G224200	No alias	Ribosomal protein S13/S18 family	0.05	Orthogroups_2024-Update
Glyma.20G169900	No alias	Ribosomal protein S13/S18 family	0.12	Orthogroups_2024-Update
HORVU5Hr1G104720.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.16	Orthogroups_2024-Update
Kfl00001_0620	kfl00001_0620_v1.1	(at4g09800 : 247.0) encodes a ribosomal protein S18C, a...	0.09	Orthogroups_2024-Update
LOC_Os07g07709	No alias	ribosomal protein S13p/S18e, putative, expressed	0.07	Orthogroups_2024-Update
MA_10429265g0010	No alias	(at4g09800 : 256.0) encodes a ribosomal protein S18C, a...	0.12	Orthogroups_2024-Update
Mp1g07420.1	No alias	component RPS18 of SSU proteome	0.11	Orthogroups_2024-Update
Mp5g02820.1	No alias	component RPS18 of SSU proteome	0.12	Orthogroups_2024-Update
Potri.002G051300	No alias	Ribosomal protein S13/S18 family	0.09	Orthogroups_2024-Update
Potri.005G211200	No alias	Ribosomal protein S13/S18 family	0.1	Orthogroups_2024-Update
Pp1s14_433V6	No alias	40s ribosomal protein s18	0.13	Orthogroups_2024-Update
Pp1s215_71V6	No alias	40s ribosomal protein s18	0.35	Orthogroups_2024-Update
Pp1s215_81V6	No alias	40s ribosomal protein s18	0.23	Orthogroups_2024-Update
Pp1s242_94V6	No alias	40s ribosomal protein s18	0.11	Orthogroups_2024-Update
Pp1s72_222V6	No alias	40s ribosomal protein s18	0.03	Orthogroups_2024-Update
Seita.2G048400.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Seita.5G053700.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.22	Orthogroups_2024-Update
Sobic.001G058900.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Sobic.002G049300.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Solyc03g078290	No alias	Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS)	0.29	Orthogroups_2024-Update
Solyc06g073370	No alias	Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS)	0.14	Orthogroups_2024-Update
Sopen03g021040	No alias	Ribosomal protein S13/S18	0.22	Orthogroups_2024-Update
Sopen06g029750	No alias	Ribosomal protein S13/S18	0.14	Orthogroups_2024-Update
Sopen11g001640	No alias	Ribosomal protein S13/S18	0.09	Orthogroups_2024-Update
evm.model.contig_2176.2	No alias	(at4g09800 : 195.0) encodes a ribosomal protein S18C, a...	0.35	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	16Dec
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	142

External Links

No external refs found!

Brara.I02440.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation