1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I02452.1

Brara.I02452.1


Description : Unknown function


Gene families : OG_42_0010081 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010081_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I02452.1
Cluster HCAA Clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
At1g34160 No alias Pentatricopeptide repeat-containing protein At1g34160... 0.05 Orthogroups_2024-Update
Bradi1g45290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Sobic.010G091500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004814 arginine-tRNA ligase activity IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006420 arginyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 485 580
IPR002885 Pentatricopeptide_repeat 169 215
IPR002885 Pentatricopeptide_repeat 270 317
IPR002885 Pentatricopeptide_repeat 345 368
IPR002885 Pentatricopeptide_repeat 244 267
IPR002885 Pentatricopeptide_repeat 71 97
IPR002885 Pentatricopeptide_repeat 142 168
No external refs found!