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  5. Brara.I02522.1

Brara.I02522.1


Description : regulatory protein *(FBW2) of RNA-induced silencing complex (RISC) assembly & substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase complex


Gene families : OG_42_0000249 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000249_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I02522.1
Cluster HCAA Clusters: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
A4A49_00248 No alias f-box protein fbw2 0.04 Orthogroups_2024-Update
Bradi3g58610 No alias F-BOX WITH WD-40 2 0.02 Orthogroups_2024-Update
Bradi4g04740 No alias RNI-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G109140 No alias F-BOX WITH WD-40 2 0.03 Orthogroups_2024-Update
HORVU1Hr1G004970.3 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os06g11630 No alias OsFBX192 - F-box domain containing protein, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 189 209
IPR001611 Leu-rich_rpt 131 152
IPR001810 F-box_dom 17 56
No external refs found!