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  5. Brara.I02739.1

Brara.I02739.1


Description : siRNA-binding factor *(AGO2) of non-canonical RdDM pathway


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I02739.1
Cluster HCAA Clusters: Cluster_314

Target Alias Description ECC score Gene Family Method Actions
Brara.E01925.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J01517.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
MA_594g0010 No alias (at1g48410 : 1189.0) Encodes an RNA Slicer that... 0.03 Orthogroups_2024-Update
PSME_00031437-RA No alias (at1g69440 : 981.0) Encodes ARGONAUTE7, a member of the... 0.02 Orthogroups_2024-Update
Potri.014G159400 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Seita.2G310600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G331800.1 No alias regulatory protein *(AGO7) of transacting siRNA pathway 0.03 Orthogroups_2024-Update
Sobic.009G259900.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Sopen09g031660 No alias Piwi domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP Predicted GO
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0061650 ubiquitin-like protein conjugating enzyme activity IEP Predicted GO
MF GO:0061657 UFM1 conjugating enzyme activity IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0071568 UFM1 transferase activity IEP Predicted GO
BP GO:0071569 protein ufmylation IEP Predicted GO
InterPro domains Description Start Stop
IPR003100 PAZ_dom 410 517
IPR032474 Argonaute_N 196 328
IPR032472 ArgoL2 533 579
IPR014811 ArgoL1 338 388
IPR003165 Piwi 691 986
No external refs found!