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  5. Brara.I02757.1

Brara.I02757.1


Description : cofactor of plastid-encoded RNA polymerase *(TAC9) & ssDNA-binding protein *(OSB)


Gene families : OG_42_0002038 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002038_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I02757.1
Cluster HCAA Clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
At1g31010 No alias Protein OSB4, chloroplastic... 0.04 Orthogroups_2024-Update
At4g20010 No alias PTAC9 [Source:UniProtKB/TrEMBL;Acc:A0A178UX75] 0.03 Orthogroups_2024-Update
Bradi1g14220 No alias Primosome PriB/single-strand DNA-binding 0.03 Orthogroups_2024-Update
Brara.K01788.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 Orthogroups_2024-Update
Seita.9G162700.1 No alias ssDNA-binding protein *(OSB) 0.03 Orthogroups_2024-Update
Sobic.001G161400.1 No alias ssDNA-binding protein *(OSB) 0.03 Orthogroups_2024-Update
Sobic.003G425100.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 Orthogroups_2024-Update
Sopen09g002310 No alias Single-strand binding protein family 0.05 Orthogroups_2024-Update
Sopen09g027630 No alias Single-strand binding protein family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!