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  5. Brara.I02993.1

Brara.I02993.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I02993.1
Cluster HCAA Clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
139408 No alias P-glycoprotein 20 0.02 Orthogroups_2024-Update
230688 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
408755 No alias P-glycoprotein 18 0.03 Orthogroups_2024-Update
Bradi2g11210 No alias P-glycoprotein 21 0.02 Orthogroups_2024-Update
Bradi2g47347 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
Bradi2g47360 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Bradi3g06577 No alias ABC transporter family protein 0.05 Orthogroups_2024-Update
Brara.I00328.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G004748 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Glyma.01G008200 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.01G016500 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Glyma.09G206300 No alias P-glycoprotein 2 0.04 Orthogroups_2024-Update
Glyma.13G119000 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Glyma.17G041200 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
Glyma.18G154200 No alias ABC transporter family protein 0.04 Orthogroups_2024-Update
LOC_Os01g29870 No alias multidrug resistance protein 9, putative, expressed 0.03 Orthogroups_2024-Update
MA_8945353g0010 No alias (at3g28860 : 432.0) Belongs to the family of ATP-binding... 0.03 Orthogroups_2024-Update
PSME_00006916-RA No alias (at1g02520 : 643.0) P-glycoprotein 11 (PGP11); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00016714-RA No alias (q6yuu5|mdr_orysa : 1107.0) Putative multidrug... 0.04 Orthogroups_2024-Update
PSME_00023484-RA No alias (at2g36910 : 1766.0) Belongs to the family of... 0.04 Orthogroups_2024-Update
PSME_00042040-RA No alias (at3g28345 : 1318.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
Potri.001G139700 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Potri.002G019600 No alias P-glycoprotein 13 0.03 Orthogroups_2024-Update
Potri.006G074100 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Seita.5G302200.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.003G139300.3 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.006G236700.1 No alias auxin efflux transporter *(ABCB19) & subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.007G163800.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc06g009280 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.03 Orthogroups_2024-Update
Sopen02g032160 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update
Sopen06g004020 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update
Sopen08g025270 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update
Sopen12g033620 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update
evm.model.tig00000741.4 No alias (at3g62150 : 432.0) P-glycoprotein 21 (PGP21); FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 384 532
IPR011527 ABC1_TM_dom 41 314
IPR011527 ABC1_TM_dom 678 948
IPR003439 ABC_transporter-like 1017 1165
No external refs found!