Description : 40S ribosomal protein S3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIP7]
Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Arabidopsis release: At2g31610 | |
Cluster | HCCA clusters: Cluster_66 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_00336 | No alias | 40s ribosomal protein s3-3 | 0.04 | Orthogroups_2024-Update | |
Bradi3g16150 | No alias | Ribosomal protein S3 family protein | 0.05 | Orthogroups_2024-Update | |
Brara.C01612.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.C01619.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
Cre02.g102250 | No alias | Ribosomal protein S3 family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.10G133100 | No alias | Ribosomal protein S3 family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.10G133800 | No alias | Ribosomal protein S3 family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G207300 | No alias | Ribosomal protein S3 family protein | 0.03 | Orthogroups_2024-Update | |
Mp1g16730.1 | No alias | component RPS3 of SSU proteome | 0.02 | Orthogroups_2024-Update | |
PSME_00040312-RA | No alias | (at5g35530 : 390.0) Ribosomal protein S3 family protein;... | 0.05 | Orthogroups_2024-Update | |
Pp1s127_74V6 | No alias | 40s ribosomal protein | 0.05 | Orthogroups_2024-Update | |
Pp1s136_175V6 | No alias | 40s ribosomal protein | 0.04 | Orthogroups_2024-Update | |
Pp1s29_222V6 | No alias | 40s ribosomal protein | 0.05 | Orthogroups_2024-Update | |
Pp1s31_178V6 | No alias | 40s ribosomal protein | 0.03 | Orthogroups_2024-Update | |
Pp1s41_146V6 | No alias | 40s ribosomal protein | 0.06 | Orthogroups_2024-Update | |
Pp1s454_3V6 | No alias | 40s ribosomal protein | 0.05 | Orthogroups_2024-Update | |
Seita.2G385700.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
Seita.6G050300.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Sobic.002G371100.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Sobic.007G053300.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Solyc07g041310 | No alias | Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) | 0.05 | Orthogroups_2024-Update | |
Solyc08g061850 | No alias | Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) | 0.03 | Orthogroups_2024-Update | |
Solyc08g061960 | No alias | Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) | 0.07 | Orthogroups_2024-Update | |
Sopen07g020630 | No alias | Ribosomal protein S3, C-terminal domain | 0.07 | Orthogroups_2024-Update | |
Sopen08g017480 | No alias | Ribosomal protein S3, C-terminal domain | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_2149.7 | No alias | (at5g35530 : 302.0) Ribosomal protein S3 family protein;... | 0.04 | Orthogroups_2024-Update | |
evm.model.tig00021462.41 | No alias | (at2g31610 : 358.0) Ribosomal protein S3 family protein;... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Predicted GO |
BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0000154 | rRNA modification | IEP | Predicted GO |
BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | Predicted GO |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0004055 | argininosuccinate synthase activity | IEP | Predicted GO |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Predicted GO |
MF | GO:0004797 | thymidine kinase activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
BP | GO:0006099 | tricarboxylic acid cycle | IEP | Predicted GO |
BP | GO:0006101 | citrate metabolic process | IEP | Predicted GO |
BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
BP | GO:0006525 | arginine metabolic process | IEP | Predicted GO |
BP | GO:0006526 | arginine biosynthetic process | IEP | Predicted GO |
BP | GO:0006555 | methionine metabolic process | IEP | Predicted GO |
MF | GO:0008172 | S-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predicted GO |
BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009086 | methionine biosynthetic process | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
BP | GO:0016999 | antibiotic metabolic process | IEP | Predicted GO |
MF | GO:0019136 | deoxynucleoside kinase activity | IEP | Predicted GO |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predicted GO |
MF | GO:0019206 | nucleoside kinase activity | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
BP | GO:0031167 | rRNA methylation | IEP | Predicted GO |
BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Predicted GO |
MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
BP | GO:0070475 | rRNA base methylation | IEP | Predicted GO |
BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
BP | GO:0072350 | tricarboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Predicted GO |
No external refs found! |