1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I03175.1

Brara.I03175.1


Description : effector receptor *(NLR)


Gene families : OG_42_0000010 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I03175.1
Cluster HCAA Clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
At1g63740 No alias Disease resistance protein (TIR-NBS-LRR class) family... 0.04 Orthogroups_2024-Update
At3g44630 No alias Disease resistance protein (TIR-NBS-LRR class) family... 0.04 Orthogroups_2024-Update
At5g48770 No alias Disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9FKB9] 0.05 Orthogroups_2024-Update
Brara.I01255.1 No alias effector receptor *(NLR) 0.03 Orthogroups_2024-Update
Brara.I01937.1 No alias effector receptor *(NLR) 0.03 Orthogroups_2024-Update
Glyma.02G077000 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Orthogroups_2024-Update
Glyma.03G052800 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.02 Orthogroups_2024-Update
Glyma.06G259800 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Glyma.15G160900 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Glyma.16G085900 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Glyma.16G159600 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Glyma.16G198900 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.02 Orthogroups_2024-Update
Glyma.16G215300 No alias transmembrane receptors;ATP binding 0.03 Orthogroups_2024-Update
Glyma.U033205 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.03 Orthogroups_2024-Update
PSME_00012370-RA No alias (at4g33300 : 198.0) ADR1-like 1 (ADR1-L1); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Potri.003G014200 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Potri.003G084200 No alias transmembrane receptors;ATP binding 0.03 Orthogroups_2024-Update
Potri.T040200 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.02 Orthogroups_2024-Update
Pp1s145_93V6 No alias leucine-rich repeat-containing 0.04 Orthogroups_2024-Update
Pp1s223_83V6 No alias tmv resistance protein 0.03 Orthogroups_2024-Update
Solyc09g092410 No alias Disease resistance protein (TIR-NBS-LRR class) family... 0.03 Orthogroups_2024-Update
Sopen01g004310 No alias NB-ARC domain 0.03 Orthogroups_2024-Update
Sopen11g006120 No alias NB-ARC domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEA 16Dec
MF GO:0043531 ADP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000157 TIR_dom 183 352
IPR000157 TIR_dom 18 171
IPR002182 NB-ARC 364 590
No external refs found!