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  5. Brara.I03230.1

Brara.I03230.1


Description : component *(eS31) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I03230.1
Cluster HCAA Clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
101548 No alias ubiquitin 5 0.02 Orthogroups_2024-Update
19615 No alias polyubiquitin 10 0.04 Orthogroups_2024-Update
At2g36170 No alias Ubiquitin-60S ribosomal protein L40-1... 0.04 Orthogroups_2024-Update
Bradi1g30940 No alias related to ubiquitin 1 0.02 Orthogroups_2024-Update
Bradi1g68940 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.05 Orthogroups_2024-Update
Bradi2g12280 No alias Ribosomal protein S27a / Ubiquitin family protein 0.03 Orthogroups_2024-Update
Bradi4g10327 No alias polyubiquitin 10 0.1 Orthogroups_2024-Update
Bradi4g38540 No alias ubiquitin extension protein 1 0.05 Orthogroups_2024-Update
Brara.C02349.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.D00067.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.E00859.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.I03566.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Cre01.g007051 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.04 Orthogroups_2024-Update
Cre06.g273600 No alias Ribosomal protein S27a / Ubiquitin family protein 0.06 Orthogroups_2024-Update
GRMZM2G006293 No alias Ribosomal protein S27a / Ubiquitin family protein 0.06 Orthogroups_2024-Update
GRMZM2G047732 No alias Ribosomal protein S27a / Ubiquitin family protein 0.04 Orthogroups_2024-Update
GRMZM2G168829 No alias polyubiquitin 10 0.04 Orthogroups_2024-Update
Glyma.01G029200 No alias Ribosomal protein S27a / Ubiquitin family protein 0.03 Orthogroups_2024-Update
Glyma.02G036000 No alias Ribosomal protein S27a / Ubiquitin family protein 0.04 Orthogroups_2024-Update
Glyma.03G197600 No alias ubiquitin extension protein 1 0.03 Orthogroups_2024-Update
Glyma.09G023700 No alias Ribosomal protein S27a / Ubiquitin family protein 0.04 Orthogroups_2024-Update
Glyma.19G195500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.04 Orthogroups_2024-Update
HORVU1Hr1G023660.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
HORVU4Hr1G001170.5 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Kfl00345_0130 kfl00345_0130_v1.... (at3g52590 : 254.0) Ubiquitin extension protein;... 0.03 Orthogroups_2024-Update
MA_13101g0020 No alias (at3g52590 : 257.0) Ubiquitin extension protein;... 0.03 Orthogroups_2024-Update
MA_529552g0010 No alias (at3g62250 : 229.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:... 0.06 Orthogroups_2024-Update
MA_53043g0010 No alias (at1g31340 : 234.0) Encodes a ubiquitin-related protein... 0.03 Orthogroups_2024-Update
Mp7g12490.1 No alias component RPL40 of LSU proteome component 0.03 Orthogroups_2024-Update
Mp7g14690.1 No alias component RPS27a of SSU proteome 0.07 Orthogroups_2024-Update
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.06 Orthogroups_2024-Update
Potri.001G025300 No alias ubiquitin 6 0.03 Orthogroups_2024-Update
Potri.012G024300 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.07 Orthogroups_2024-Update
Potri.015G007100 No alias ubiquitin extension protein 1 0.03 Orthogroups_2024-Update
Pp1s13_40V6 No alias ubiquitin extension protein 0.04 Orthogroups_2024-Update
Pp1s184_64V6 No alias ubiquitin extension protein 0.04 Orthogroups_2024-Update
Pp1s241_60V6 No alias ubiquitin fusion protein 0.02 Orthogroups_2024-Update
Pp1s333_9V6 No alias ubiquitin fusion protein 0.05 Orthogroups_2024-Update
Pp1s56_39V6 No alias ubiquitin extension protein 0.04 Orthogroups_2024-Update
Pp1s56_52V6 No alias ubiquitin extension protein 0.05 Orthogroups_2024-Update
Seita.2G133700.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Seita.5G156000.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Seita.7G270700.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Seita.9G478400.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G444800.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.002G135200.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.003G152600.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Sobic.009G054800.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Solyc01g056940 No alias Ubiquitin 0.12 Orthogroups_2024-Update
Solyc01g096290 No alias ubiquitin-ribosomal fusion protein 0.12 Orthogroups_2024-Update
Solyc03g082570 No alias ubiquitin-ribosomal fusion protein 0.09 Orthogroups_2024-Update
Solyc08g008590 No alias ubiquitin-ribosomal fusion protein 0.09 Orthogroups_2024-Update
Solyc08g083120 No alias ubiquitin-ribosomal fusion protein 0.06 Orthogroups_2024-Update
Solyc12g098940 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.04 Orthogroups_2024-Update
Solyc12g099030 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.09 Orthogroups_2024-Update
Sopen01g029970 No alias Ubiquitin family 0.06 Orthogroups_2024-Update
Sopen01g040060 No alias Ubiquitin family 0.03 Orthogroups_2024-Update
Sopen03g022330 No alias Ubiquitin family 0.07 Orthogroups_2024-Update
Sopen08g004410 No alias Ubiquitin family 0.08 Orthogroups_2024-Update
Sopen08g031340 No alias Ubiquitin family 0.12 Orthogroups_2024-Update
Sopen11g001620 No alias Ubiquitin family 0.04 Orthogroups_2024-Update
Sopen12g033690 No alias Ubiquitin family 0.03 Orthogroups_2024-Update
Sopen12g033760 No alias Ubiquitin family 0.03 Orthogroups_2024-Update
evm.model.contig_2055.11 No alias (at3g52590 : 241.0) Ubiquitin extension protein;... 0.02 Orthogroups_2024-Update
evm.model.contig_2285.8 No alias (p00074|cyc_ginbi : 153.0) Cytochrome c - Ginkgo biloba... 0.01 Orthogroups_2024-Update
evm.model.contig_3445.1 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
evm.model.tig00022075.50 No alias (at3g52590 : 236.0) Ubiquitin extension protein;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002906 Ribosomal_S27a 102 147
IPR000626 Ubiquitin_dom 3 74
No external refs found!