Brara.I03484.1

Description : ligand-gated cation channel *(GLR)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I03484.1
Cluster	HCAA Clusters: Cluster_344

Target	Alias	Description	ECC score	Gene Family Method
A4A49_28967	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
A4A49_42200	No alias	glutamate receptor 2.8	0.02	Orthogroups_2024-Update
At2g24710	No alias	glutamate receptor 2.3 [Source:TAIR;Acc:AT2G24710]	0.03	Orthogroups_2024-Update
At2g29120	No alias	Glutamate receptor 2.7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGN0]	0.04	Orthogroups_2024-Update
Bradi1g32800	No alias	glutamate receptor 3.4	0.03	Orthogroups_2024-Update
Brara.H00536.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Brara.I00393.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Brara.I05466.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
GRMZM2G148807	No alias	glutamate receptor 3.4	0.04	Orthogroups_2024-Update
Glyma.01G157900	No alias	glutamate receptor 3.6	0.03	Orthogroups_2024-Update
Glyma.13G272400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
HORVU0Hr1G036590.3	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU2Hr1G049510.4	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU5Hr1G063510.2	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
LOC_Os02g54640	No alias	glutamate receptor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g49570	No alias	glutamate receptor, putative, expressed	0.02	Orthogroups_2024-Update
MA_10140272g0010	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
MA_9224859g0010	No alias	(at4g35290 : 187.0) Encodes a putative glutamate...	0.03	Orthogroups_2024-Update
PSME_00005234-RA	No alias	(at1g05200 : 189.0) member of Putative ligand-gated ion...	0.02	Orthogroups_2024-Update
PSME_00009649-RA	No alias	(at4g35290 : 475.0) Encodes a putative glutamate...	0.02	Orthogroups_2024-Update
PSME_00018332-RA	No alias	(at1g05200 : 548.0) member of Putative ligand-gated ion...	0.02	Orthogroups_2024-Update
PSME_00021964-RA	No alias	(at1g05200 : 282.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00038557-RA	No alias	(at1g42540 : 140.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00049912-RA	No alias	(at2g32390 : 138.0) Encodes a ionotropic glutamate...	0.03	Orthogroups_2024-Update
PSME_00050642-RA	No alias	(q7xp59\|glr31_orysa : 567.0) Glutamate receptor 3.1...	0.05	Orthogroups_2024-Update
Seita.2G212900.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Seita.4G260800.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Sobic.004G013300.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Sobic.010G231300.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.010G231500.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
evm.model.contig_3514.1	No alias	(at4g35290 : 111.0) Encodes a putative glutamate...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	16Dec
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0004512	inositol-3-phosphate synthase activity	IEP	Predicted GO
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Predicted GO
MF	GO:0004664	prephenate dehydratase activity	IEP	Predicted GO
MF	GO:0004779	sulfate adenylyltransferase activity	IEP	Predicted GO
MF	GO:0004781	sulfate adenylyltransferase (ATP) activity	IEP	Predicted GO
MF	GO:0005048	signal sequence binding	IEP	Predicted GO
CC	GO:0005778	peroxisomal membrane	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0006020	inositol metabolic process	IEP	Predicted GO
BP	GO:0006021	inositol biosynthetic process	IEP	Predicted GO
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Predicted GO
BP	GO:0006621	protein retention in ER lumen	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
BP	GO:0007031	peroxisome organization	IEP	Predicted GO
BP	GO:0008150	biological_process	IEP	Predicted GO
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Predicted GO
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015297	antiporter activity	IEP	Predicted GO
BP	GO:0016042	lipid catabolic process	IEP	Predicted GO
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0016872	intramolecular lyase activity	IEP	Predicted GO
MF	GO:0022804	active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predicted GO
CC	GO:0031903	microbody membrane	IEP	Predicted GO
BP	GO:0032507	maintenance of protein location in cell	IEP	Predicted GO
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predicted GO
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Predicted GO
BP	GO:0035556	intracellular signal transduction	IEP	Predicted GO
BP	GO:0036260	RNA capping	IEP	Predicted GO
MF	GO:0042277	peptide binding	IEP	Predicted GO
CC	GO:0042579	microbody	IEP	Predicted GO
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
CC	GO:0044438	microbody part	IEP	Predicted GO
CC	GO:0044439	peroxisomal part	IEP	Predicted GO
BP	GO:0045185	maintenance of protein location	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
MF	GO:0046923	ER retention sequence binding	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0051235	maintenance of location	IEP	Predicted GO
BP	GO:0051651	maintenance of location in cell	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
MF	GO:0070566	adenylyltransferase activity	IEP	Predicted GO
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Predicted GO
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt	795	827
IPR001638	Solute-binding_3/MltF_N	469	794
IPR001828	ANF_lig-bd_rcpt	48	397

External Links

No external refs found!

Brara.I03484.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation