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  5. Brara.I03802.1

Brara.I03802.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I03802.1
Cluster HCAA Clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
A4A49_40187 No alias expansin-a3 0.03 Orthogroups_2024-Update
At3g29030 No alias At3g29030 [Source:UniProtKB/TrEMBL;Acc:Q1ECM3] 0.03 Orthogroups_2024-Update
At5g02260 No alias EXPA9 [Source:UniProtKB/TrEMBL;Acc:A0A178UHJ8] 0.03 Orthogroups_2024-Update
At5g39270 No alias Expansin-A22 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL80] 0.03 Orthogroups_2024-Update
At5g39310 No alias Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76] 0.03 Orthogroups_2024-Update
GRMZM2G105844 No alias expansin A1 0.03 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.03 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_792493g0010 No alias (at1g69530 : 351.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Mp1g22730.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp2g18600.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00045415-RA No alias (at4g01630 : 291.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Seita.3G204900.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 166 243
IPR009009 RlpA-like_DPBB 69 155
No external refs found!