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  5. Brara.I03817.1

Brara.I03817.1


Description : RopGEF guanine nucleotide exchange factor *(PRONE)


Gene families : OG_42_0000202 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I03817.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
At3g55660 No alias Rop guanine nucleotide exchange factor 6... 0.09 Orthogroups_2024-Update
At5g05940 No alias Rop guanine nucleotide exchange factor 5... 0.02 Orthogroups_2024-Update
Glyma.02G252600 No alias ROP guanine nucleotide exchange factor 5 0.04 Orthogroups_2024-Update
Glyma.14G064000 No alias ROP guanine nucleotide exchange factor 5 0.19 Orthogroups_2024-Update
Glyma.18G232800 No alias RHO guanyl-nucleotide exchange factor 3 0.12 Orthogroups_2024-Update
HORVU1Hr1G072910.3 No alias RopGEF guanine nucleotide exchange factor *(PRONE) 0.02 Orthogroups_2024-Update
HORVU3Hr1G085680.2 No alias RopGEF guanine nucleotide exchange factor *(PRONE) 0.02 Orthogroups_2024-Update
MA_66695g0010 No alias (at5g02010 : 540.0) Encodes a member of KPP-like gene... 0.03 Orthogroups_2024-Update
PSME_00024626-RA No alias (at3g24620 : 469.0) Encodes a member of KPP-like gene... 0.02 Orthogroups_2024-Update
Seita.3G148800.1 No alias RopGEF guanine nucleotide exchange factor *(PRONE) 0.02 Orthogroups_2024-Update
Solyc08g006550 No alias Rop guanine nucleotide exchange factor, putative (AHRD... 0.14 Orthogroups_2024-Update
Sopen01g053980 No alias PRONE (Plant-specific Rop nucleotide exchanger) 0.03 Orthogroups_2024-Update
Sopen08g002510 No alias PRONE (Plant-specific Rop nucleotide exchanger) 0.12 Orthogroups_2024-Update
evm.model.contig_2063.2 No alias (at4g38430 : 92.8) Member of the RopGEF (guanine... 0.05 Orthogroups_2024-Update
evm.model.contig_2063.3 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005512 PRONE_dom 100 469
No external refs found!