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  5. Brara.I03959.1

Brara.I03959.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I03959.1
Cluster HCAA Clusters: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
At3g66656 No alias AGAMOUS-like 91 [Source:UniProtKB/TrEMBL;Acc:Q9C836] 0.03 Orthogroups_2024-Update
Brara.A01539.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.B03794.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G129034 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
HORVU1Hr1G008300.3 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os06g30830 No alias OsMADS76 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
Potri.001G328600 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
Seita.2G266600.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Seita.5G432700.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Solyc12g056460 No alias MADS box transcription factor (AHRD V3.3 *** C3PTE7_POPTO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006955 immune response IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
BP GO:0045087 innate immune response IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 21 68
No external refs found!