Brara.I03965.1

Description : Unknown function

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I03965.1
Cluster	HCAA Clusters: Cluster_306

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14235	No alias	developmental protein sepallata 1	0.02	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.02	Orthogroups_2024-Update
A4A49_26362	No alias	floral homeotic protein globosa	0.03	Orthogroups_2024-Update
At1g77980	No alias	Agamous-like MADS-box protein AGL66...	0.03	Orthogroups_2024-Update
At3g57230	No alias	Agamous-like MADS-box protein AGL16...	0.03	Orthogroups_2024-Update
GRMZM2G171365	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.01G020500	No alias	AGAMOUS-like 21	0.03	Orthogroups_2024-Update
Glyma.03G019300	No alias	AGAMOUS-like 20	0.04	Orthogroups_2024-Update
Glyma.08G250800	No alias	AGAMOUS-like 8	0.03	Orthogroups_2024-Update
Glyma.09G266400	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
HORVU1Hr1G008300.3	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
HORVU6Hr1G002270.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os05g11414	No alias	OsMADS58 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
Potri.001G284301	No alias	AGAMOUS-like 21	0.03	Orthogroups_2024-Update
Potri.001G284600	No alias	AGAMOUS-like 17	0.03	Orthogroups_2024-Update
Potri.004G002400	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Potri.005G150501	No alias	AGAMOUS-like 16	0.03	Orthogroups_2024-Update
Potri.007G115000	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.010G154100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Solyc01g106170	No alias	AGAMOUS-like MADS-box transcription factor (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc08g067230	No alias	MADS box transcription factor (AHRD V3.3 *** G3EIU8_9SOLA)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Predicted GO
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006825	copper ion transport	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predicted GO
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0016972	thiol oxidase activity	IEP	Predicted GO
BP	GO:0034613	cellular protein localization	IEP	Predicted GO
BP	GO:0034975	protein folding in endoplasmic reticulum	IEP	Predicted GO
BP	GO:0035434	copper ion transmembrane transport	IEP	Predicted GO
BP	GO:0045048	protein insertion into ER membrane	IEP	Predicted GO
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
BP	GO:0051205	protein insertion into membrane	IEP	Predicted GO
BP	GO:0070727	cellular macromolecule localization	IEP	Predicted GO
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	Predicted GO
MF	GO:0071949	FAD binding	IEP	Predicted GO
BP	GO:0072657	protein localization to membrane	IEP	Predicted GO
BP	GO:0090150	establishment of protein localization to membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	42	117

External Links

No external refs found!

Brara.I03965.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation