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  5. Brara.I04009.1

Brara.I04009.1


Description : E3 ubiquitin ligase *(SINA)


Gene families : OG_42_0000730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000730_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04009.1
Cluster HCAA Clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
MA_161463g0020 No alias (at3g58040 : 321.0) Encodes a RING finger domain... 0.03 Orthogroups_2024-Update
MA_5095g0010 No alias (at3g61790 : 370.0) Protein with RING/U-box and... 0.03 Orthogroups_2024-Update
Seita.1G100400.1 No alias E3 ubiquitin ligase *(SINA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA 16Dec
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
BP GO:0007275 multicellular organism development IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 104 303
No external refs found!