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  5. Brara.I04090.1

Brara.I04090.1


Description : component *(eL38) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04090.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
270247 No alias Ribosomal L38e protein family 0.04 Orthogroups_2024-Update
A4A49_59471 No alias 60s ribosomal protein l38 0.07 Orthogroups_2024-Update
AC190609.3_FG002 No alias Ribosomal L38e protein family 0.03 Orthogroups_2024-Update
Bradi1g25302 No alias Ribosomal L38e protein family 0.06 Orthogroups_2024-Update
Brara.C02203.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.E00357.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Cre07.g325746 No alias Ribosomal L38e protein family 0.05 Orthogroups_2024-Update
Glyma.08G100000 No alias Ribosomal L38e protein family 0.04 Orthogroups_2024-Update
Kfl00433_0040 kfl00433_0040_v1.1 (at3g59540 : 122.0) Ribosomal L38e protein family;... 0.04 Orthogroups_2024-Update
LOC_Os11g24610 No alias 60S ribosomal protein L38, putative, expressed 0.03 Orthogroups_2024-Update
MA_20588g0010 No alias (at3g59540 : 129.0) Ribosomal L38e protein family;... 0.07 Orthogroups_2024-Update
Mp7g14520.1 No alias component RPL38 of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00035421-RA No alias (at3g59540 : 127.0) Ribosomal L38e protein family;... 0.05 Orthogroups_2024-Update
Potri.007G131800 No alias Ribosomal L38e protein family 0.03 Orthogroups_2024-Update
Potri.010G181200 No alias Ribosomal L38e protein family 0.03 Orthogroups_2024-Update
Potri.017G020000 No alias Ribosomal L38e protein family 0.03 Orthogroups_2024-Update
Pp1s227_122V6 No alias 60s ribosomal protein l38 0.05 Orthogroups_2024-Update
Pp1s288_10V6 No alias 60s ribosomal protein l38 0.05 Orthogroups_2024-Update
Seita.2G274700.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Seita.6G231700.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Sobic.007G184600.2 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Solyc05g055640 No alias ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1) 0.03 Orthogroups_2024-Update
Solyc11g008510 No alias 60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC) 0.06 Orthogroups_2024-Update
Sopen11g004300 No alias Ribosomal L38e protein family 0.08 Orthogroups_2024-Update
evm.model.tig00021719.6 No alias (at3g59540 : 110.0) Ribosomal L38e protein family;... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004312 fatty acid synthase activity IEP Predicted GO
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002675 Ribosomal_L38e 2 68
No external refs found!