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  5. Brara.I04216.1

Brara.I04216.1


Description : LIM-type transcription factor


Gene families : OG_42_0000555 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04216.1
Cluster HCAA Clusters: Cluster_398

Target Alias Description ECC score Gene Family Method Actions
At3g61230 No alias LIM domain-containing protein PLIM2c... 0.03 Orthogroups_2024-Update
Bradi5g16666 No alias GATA type zinc finger transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.05G205800 No alias GATA type zinc finger transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.003G124300 No alias GATA type zinc finger transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.1G250500.1 No alias LIM-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G201000.1 No alias LIM-type transcription factor 0.02 Orthogroups_2024-Update
Solyc03g114000 No alias Pollen-specific protein SF3, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 106 161
IPR001781 Znf_LIM 10 65
No external refs found!