Brara.I04264.1

Description : ARF-type transcription factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I04264.1
Cluster	HCAA Clusters: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
A4A49_07736	No alias	auxin response factor 5	0.04	Orthogroups_2024-Update
Brara.G02126.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.K00855.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G023813	No alias	auxin response factor 17	0.03	Orthogroups_2024-Update
GRMZM2G179121	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
GRMZM2G475263	No alias	auxin response factor 11	0.02	Orthogroups_2024-Update
Glyma.01G002100	No alias	Transcriptional factor B3 family protein /...	0.05	Orthogroups_2024-Update
Glyma.02G239600	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.04G200600	No alias	auxin response factor 2	0.05	Orthogroups_2024-Update
Glyma.07G202200	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.09G072200	No alias	Transcriptional factor B3 family protein /...	0.06	Orthogroups_2024-Update
Glyma.13G112600	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.15G181000	No alias	auxin response factor 19	0.03	Orthogroups_2024-Update
Glyma.17G047100	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
HORVU2Hr1G089660.7	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os01g48060	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g47150	No alias	auxin response factor 18, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g48950	No alias	auxin response factor 19, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
Potri.003G142100	No alias	auxin response factor 9	0.03	Orthogroups_2024-Update
Potri.004G211700	No alias	auxin response factor 10	0.04	Orthogroups_2024-Update
Potri.014G100100	No alias	auxin response factor 11	0.04	Orthogroups_2024-Update
Pp1s339_47V6	No alias	auxin response factor 10	0.03	Orthogroups_2024-Update
Pp1s86_1V6	No alias	auxin response	0.04	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.006G278900.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sopen01g045470	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen04g034850	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predicted GO
MF	GO:0004312	fatty acid synthase activity	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0005984	disaccharide metabolic process	IEP	Predicted GO
BP	GO:0005985	sucrose metabolic process	IEP	Predicted GO
BP	GO:0005986	sucrose biosynthetic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0009922	fatty acid elongase activity	IEP	Predicted GO
BP	GO:0018208	peptidyl-proline modification	IEP	Predicted GO
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	Predicted GO
MF	GO:0050308	sugar-phosphatase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	253	332
IPR003340	B3_DNA-bd	127	227
IPR033389	AUX/IAA_dom	449	491
IPR033389	AUX/IAA_dom	495	543

External Links

No external refs found!

Brara.I04264.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation