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  5. Brara.I04573.1

Brara.I04573.1


Description : Unknown function


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04573.1
Cluster HCAA Clusters: Cluster_370

Target Alias Description ECC score Gene Family Method Actions
A4A49_02685 No alias hypothetical protein 0.02 Orthogroups_2024-Update
A4A49_08803 No alias hypothetical protein 0.07 Orthogroups_2024-Update
Brara.F00647.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.08G275500 No alias Rhamnogalacturonate lyase family protein 0.04 Orthogroups_2024-Update
Mp2g13590.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Seita.3G119000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g076640 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc04g076660 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen05g029740 No alias Rhamnogalacturonate lyase family 0.02 Orthogroups_2024-Update
Sopen11g006060 No alias Rhamnogalacturonate lyase family 0.04 Orthogroups_2024-Update
Sopen12g030080 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP Predicted GO
BP GO:0006955 immune response IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0045087 innate immune response IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 397 467
IPR010325 Rhamnogal_lyase 32 241
IPR029411 RG-lyase_III 481 669
No external refs found!