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  5. Brara.I04605.1

Brara.I04605.1


Description : Unknown function


Gene families : OG_42_0009240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04605.1
Cluster HCAA Clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Bradi1g07090 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
GRMZM2G471348 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
PSME_00038334-RA No alias (at2g22070 : 468.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Seita.9G072300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G072900.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc04g054290 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 426 518
IPR002885 Pentatricopeptide_repeat 211 257
IPR002885 Pentatricopeptide_repeat 81 107
IPR002885 Pentatricopeptide_repeat 285 310
IPR002885 Pentatricopeptide_repeat 47 68
IPR002885 Pentatricopeptide_repeat 109 136
No external refs found!