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Description : component *(RNPS1) of RNA quality control Exon Junction complex
Gene families : OG_42_0004378 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004378_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.I04870.1 | |
| Cluster | HCAA Clusters: Cluster_295 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Potri.011G143100 | No alias | arginine/serine-rich 45 | 0.04 | Orthogroups_2024-Update | |
| Solyc10g005590 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| evm.model.tig00021222.7 | No alias | (at1g16610 : 97.4) Encodes SR45, a member of the highly... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | 16Dec |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
| BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
| MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
| CC | GO:0005681 | spliceosomal complex | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006417 | regulation of translation | IEP | Predicted GO |
| BP | GO:0006448 | regulation of translational elongation | IEP | Predicted GO |
| BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
| BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| BP | GO:0017182 | peptidyl-diphthamide metabolic process | IEP | Predicted GO |
| BP | GO:0017183 | peptidyl-diphthamide biosynthetic process from peptidyl-histidine | IEP | Predicted GO |
| BP | GO:0018202 | peptidyl-histidine modification | IEP | Predicted GO |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0034227 | tRNA thio-modification | IEP | Predicted GO |
| BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0090560 | 2-(3-amino-3-carboxypropyl)histidine synthase activity | IEP | Predicted GO |
| BP | GO:1900247 | regulation of cytoplasmic translational elongation | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| BP | GO:2000765 | regulation of cytoplasmic translation | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 95 | 161 |
| No external refs found! |