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  5. Brara.I04886.1

Brara.I04886.1


Description : SSU processome assembly factor *(SWA3)


Gene families : OG_42_0001960 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001960_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04886.1
Cluster HCAA Clusters: Cluster_326

Target Alias Description ECC score Gene Family Method Actions
At5g60990 No alias DEAD-box ATP-dependent RNA helicase 10... 0.02 Orthogroups_2024-Update
Bradi1g18930 No alias DEA(D/H)-box RNA helicase family protein 0.02 Orthogroups_2024-Update
Cre12.g505200 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G022490.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G387500.1 No alias SSU processome assembly factor *(SWA3) 0.03 Orthogroups_2024-Update
evm.model.contig_3605.3 No alias (at5g60990 : 427.0) DEA(D/H)-box RNA helicase family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 78 246
IPR001650 Helicase_C 286 393
No external refs found!