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  5. Brara.I04929.1

Brara.I04929.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04929.1
Cluster HCAA Clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Seita.2G383000.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
Sobic.010G029200.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Solyc02g089210 No alias MADS box transcription factor (AHRD V3.3 *** Q689E7_GENTR) 0.02 Orthogroups_2024-Update
Sopen02g036170 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 18 65
No external refs found!