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  5. Brara.I04991.1

Brara.I04991.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I04991.1
Cluster HCAA Clusters: Cluster_394

Target Alias Description ECC score Gene Family Method Actions
A4A49_16129 No alias putative pectate lyase 18 0.03 Orthogroups_2024-Update
Brara.B00588.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.C00647.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.05 Orthogroups_2024-Update
Brara.J02392.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.01G042700 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os10g31910 No alias pectate lyase precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10430145g0030 No alias (at4g13210 : 482.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_10433252g0010 No alias (at3g24670 : 194.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00032290-RA No alias (at4g24780 : 602.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.03 Orthogroups_2024-Update
Sopen03g030810 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 27 82
IPR002022 Pec_lyase 178 363
No external refs found!