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Description : E3 ubiquitin ligase *(SNIPER)
Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.I05006.1 | |
| Cluster | HCAA Clusters: Cluster_104 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_41488 | No alias | e3 ubiquitin-protein ligase rduf1 | 0.03 | Orthogroups_2024-Update | |
| At3g13228 | No alias | RING/U-box superfamily protein... | 0.04 | Orthogroups_2024-Update | |
| At3g30460 | No alias | RING/U-box superfamily protein... | 0.03 | Orthogroups_2024-Update | |
| At3g60080 | No alias | At3g60080 [Source:UniProtKB/TrEMBL;Acc:Q9M1D5] | 0.03 | Orthogroups_2024-Update | |
| Bradi1g52440 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g56300 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.C03342.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.G02768.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Brara.I04047.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Cre10.g422050 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G021480 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G049346 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G122848 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G157855 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.04G251600 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G244900 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.14G105900 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU0Hr1G002870.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G034800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU7Hr1G043120.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU7Hr1G092570.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| LOC_Os09g26400 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os11g37230 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_10428335g0020 | No alias | (at3g19950 : 167.0) RING/U-box superfamily protein;... | 0.04 | Orthogroups_2024-Update | |
| MA_77269g0010 | No alias | (at3g46620 : 139.0) zinc finger (C3HC4-type RING finger)... | 0.03 | Orthogroups_2024-Update | |
| MA_79051g0010 | No alias | (at3g19950 : 171.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| Mp7g04520.1 | No alias | no hits & (original description: none) | 0.02 | Orthogroups_2024-Update | |
| Potri.006G032100 | No alias | RING-H2 finger C1A | 0.03 | Orthogroups_2024-Update | |
| Potri.010G168300 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.016G029300 | No alias | RING-H2 finger C1A | 0.03 | Orthogroups_2024-Update | |
| Seita.1G332400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.6G190900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.8G172700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.005G165900.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Solyc01g009000 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) | 0.04 | Orthogroups_2024-Update | |
| Solyc02g065650 | No alias | LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Sopen02g015860 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Predicted GO |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | Predicted GO |
| MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 105 | 146 |
| No external refs found! |