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  5. Brara.I05186.1

Brara.I05186.1


Description : regulatory protein *(LOTR) involved in Casparian strip formation


Gene families : OG_42_0000240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I05186.1
Cluster HCAA Clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
90379 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
At5g25950 No alias Protein of Unknown Function (DUF239) [Source:TAIR;Acc:AT5G25950] 0.03 Orthogroups_2024-Update
Brara.F02769.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K01416.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G129947 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
GRMZM2G131650 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Kfl00248_0020 kfl00248_0020_v1.1 (at2g44220 : 163.0) Protein of Unknown Function... 0.03 Orthogroups_2024-Update
Potri.001G003800 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Solyc04g050490 No alias carboxyl-terminal peptidase (DUF239) (AHRD V3.3 *** AT5G18460.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025521 Neprosin_propep 123 229
IPR004314 Neprosin 253 464
No external refs found!