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  5. Brara.I05197.1

Brara.I05197.1


Description : helicase component *(RecQ4A) of RTR Holliday junction dissolution complex


Gene families : OG_42_0000769 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I05197.1
Cluster HCAA Clusters: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Cre12.g502350 No alias RECQ helicase L2 0.02 Orthogroups_2024-Update
Kfl00381_0040 kfl00381_0040_v1.... (at1g10930 : 306.0) DNA helicase involved in the... 0.01 Orthogroups_2024-Update
Seita.8G252800.1 No alias component *(MED34) of MEDIATOR transcription co-activator complex 0.02 Orthogroups_2024-Update
Sobic.001G275300.1 No alias component *(MED34) of MEDIATOR transcription co-activator complex 0.03 Orthogroups_2024-Update
Solyc01g100280 No alias RNA helicase DEAH-box4 0.04 Orthogroups_2024-Update
Sopen07g021600 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006260 DNA replication IEA 16Dec
BP GO:0006281 DNA repair IEA 16Dec
MF GO:0043138 3'-5' DNA helicase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002121 HRDC_dom 1018 1083
IPR018982 RQC_domain 870 983
IPR032284 RecQ_Zn-bd 782 862
IPR001650 Helicase_C 664 770
IPR011545 DEAD/DEAH_box_helicase_dom 459 627
No external refs found!