1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.I05268.1

Brara.I05268.1


Description : regulatory protein *(PIF) of red/far-red light perception & bHLH-type transcription factor


Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I05268.1
Cluster HCAA Clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
118904 No alias phytochrome interacting factor 3 0.06 Orthogroups_2024-Update
A4A49_38454 No alias transcription factor pif5 0.04 Orthogroups_2024-Update
At2g20180 No alias Transcription factor PIF1... 0.09 Orthogroups_2024-Update
At2g43010 No alias phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010] 0.06 Orthogroups_2024-Update
At3g59060 No alias Transcription factor PIF5... 0.07 Orthogroups_2024-Update
Brara.D02603.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
GRMZM2G016756 No alias phytochrome interacting factor 4 0.05 Orthogroups_2024-Update
GRMZM2G042920 No alias phytochrome interacting factor 3 0.03 Orthogroups_2024-Update
GRMZM2G062541 No alias phytochrome interacting factor 3 0.04 Orthogroups_2024-Update
GRMZM2G115960 No alias phytochrome interacting factor 3 0.02 Orthogroups_2024-Update
Glyma.02G282100 No alias phytochrome interacting factor 4 0.04 Orthogroups_2024-Update
Glyma.03G170300 No alias phytochrome interacting factor 3-like 5 0.03 Orthogroups_2024-Update
Glyma.08G303900 No alias phytochrome interacting factor 4 0.03 Orthogroups_2024-Update
Glyma.18G115700 No alias phytochrome interacting factor 4 0.03 Orthogroups_2024-Update
HORVU2Hr1G060680.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
Kfl00086_0300 kfl00086_0300_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Pp1s147_126V6 No alias helix-loop-helix dna-binding domain containing expressed 0.04 Orthogroups_2024-Update
Pp1s69_37V6 No alias dna binding 0.03 Orthogroups_2024-Update
Seita.2G029600.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
Seita.9G160700.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Sobic.001G068301.1 No alias bHLH-type transcription factor 0.06 Orthogroups_2024-Update
Sobic.001G158900.3 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
Solyc07g043580 No alias bHLH transcription factor 052 0.05 Orthogroups_2024-Update
Sopen07g023150 No alias Helix-loop-helix DNA-binding domain 0.05 Orthogroups_2024-Update
Sopen09g025180 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0005384 manganese ion transmembrane transporter activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030026 cellular manganese ion homeostasis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Predicted GO
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Predicted GO
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055071 manganese ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 310 356
No external refs found!