Brara.I05452.1

Description : pectin methylesterase

Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I05452.1
Cluster	HCAA Clusters: Cluster_362

Target	Alias	Description	ECC score	Gene Family Method
A4A49_15905	No alias	putative pectinesterase 8	0.05	Orthogroups_2024-Update
A4A49_27669	No alias	pectinesterase 2	0.03	Orthogroups_2024-Update
A4A49_32955	No alias	putative pectinesterase 53	0.03	Orthogroups_2024-Update
A4A49_38924	No alias	putative pectinesterase 53	0.03	Orthogroups_2024-Update
At1g05310	No alias	Probable pectinesterase 8...	0.03	Orthogroups_2024-Update
Brara.B03357.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Brara.I00335.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Glyma.09G035100	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Glyma.13G113700	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
LOC_Os04g46740	No alias	pectinesterase, putative, expressed	0.03	Orthogroups_2024-Update
Mp2g01420.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Mp2g19430.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Potri.004G156300	No alias	pectinesterase 11	0.03	Orthogroups_2024-Update
Potri.006G186000	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Potri.016G017700	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Pp1s112_177V6	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Pp1s175_19V6	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Pp1s461_15V6	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Pp1s67_89V6	No alias	pectin methylesterase	0.04	Orthogroups_2024-Update
Sopen01g030950	No alias	Pectinesterase	0.05	Orthogroups_2024-Update
Sopen07g022810	No alias	Pectinesterase	0.05	Orthogroups_2024-Update
Sopen07g033560	No alias	Pectinesterase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	16Dec
BP	GO:0042545	cell wall modification	IEA	16Dec
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0004150	dihydroneopterin aldolase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0005976	polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0006073	cellular glucan metabolic process	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predicted GO
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predicted GO
BP	GO:0009250	glucan biosynthetic process	IEP	Predicted GO
BP	GO:0009309	amine biosynthetic process	IEP	Predicted GO
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
MF	GO:0016759	cellulose synthase activity	IEP	Predicted GO
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Predicted GO
MF	GO:0016832	aldehyde-lyase activity	IEP	Predicted GO
BP	GO:0030243	cellulose metabolic process	IEP	Predicted GO
BP	GO:0030244	cellulose biosynthetic process	IEP	Predicted GO
MF	GO:0030410	nicotianamine synthase activity	IEP	Predicted GO
BP	GO:0030417	nicotianamine metabolic process	IEP	Predicted GO
BP	GO:0030418	nicotianamine biosynthetic process	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predicted GO
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Predicted GO
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Predicted GO
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0044042	glucan metabolic process	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Predicted GO
MF	GO:0046527	glucosyltransferase activity	IEP	Predicted GO
BP	GO:0051273	beta-glucan metabolic process	IEP	Predicted GO
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predicted GO
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0072351	tricarboxylic acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	99	392

External Links

No external refs found!

Brara.I05452.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation