Brara.I05466.1

Description : ligand-gated cation channel *(GLR)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.I05466.1
Cluster	HCAA Clusters: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
A4A49_17163	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
At2g24710	No alias	glutamate receptor 2.3 [Source:TAIR;Acc:AT2G24710]	0.04	Orthogroups_2024-Update
At2g29100	No alias	Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A178VR79]	0.05	Orthogroups_2024-Update
At2g29120	No alias	Glutamate receptor 2.7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGN0]	0.02	Orthogroups_2024-Update
At5g48410	No alias	Glutamate receptor 1.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH75]	0.03	Orthogroups_2024-Update
Brara.I03484.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
HORVU2Hr1G045730.11	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
HORVU6Hr1G009520.2	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Potri.004G052400	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
Potri.005G102700	No alias	glutamate receptor 3.6	0.03	Orthogroups_2024-Update
Sobic.010G231100.2	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Sopen05g026960	No alias	Receptor family ligand binding region	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	16Dec
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEP	Predicted GO
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Predicted GO
MF	GO:0004779	sulfate adenylyltransferase activity	IEP	Predicted GO
MF	GO:0004781	sulfate adenylyltransferase (ATP) activity	IEP	Predicted GO
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
BP	GO:0006595	polyamine metabolic process	IEP	Predicted GO
BP	GO:0006596	polyamine biosynthetic process	IEP	Predicted GO
BP	GO:0006597	spermine biosynthetic process	IEP	Predicted GO
BP	GO:0008215	spermine metabolic process	IEP	Predicted GO
BP	GO:0008216	spermidine metabolic process	IEP	Predicted GO
BP	GO:0008295	spermidine biosynthetic process	IEP	Predicted GO
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predicted GO
BP	GO:0009309	amine biosynthetic process	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Predicted GO
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Predicted GO
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Predicted GO
MF	GO:0070566	adenylyltransferase activity	IEP	Predicted GO
BP	GO:0097164	ammonium ion metabolic process	IEP	Predicted GO
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt	819	850
IPR001638	Solute-binding_3/MltF_N	531	818
IPR001828	ANF_lig-bd_rcpt	65	414

External Links

No external refs found!

Brara.I05466.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation