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  5. Brara.I05541.1

Brara.I05541.1


Description : EC_6.4 ligase forming carbon-carbon bond & subunit alpha of methylcrotonoyl-CoA carboxylase complex


Gene families : OG_42_0002197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I05541.1
Cluster HCAA Clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
At1g03090 No alias Methylcrotonoyl-CoA carboxylase subunit alpha,... 0.05 Orthogroups_2024-Update
Bradi4g02380 No alias methylcrotonyl-CoA carboxylase alpha chain,... 0.03 Orthogroups_2024-Update
Cre06.g278098 No alias methylcrotonyl-CoA carboxylase alpha chain,... 0.03 Orthogroups_2024-Update
Glyma.02G145300 No alias methylcrotonyl-CoA carboxylase alpha chain,... 0.05 Orthogroups_2024-Update
HORVU5Hr1G012900.9 No alias EC_6.4 ligase forming carbon-carbon bond & subunit alpha... 0.02 Orthogroups_2024-Update
Kfl00585_0010 kfl00585_0010_v1.1 (at1g03090 : 619.0) MCCA is the biotinylated subunit of... 0.02 Orthogroups_2024-Update
LOC_Os12g41250 No alias methylcrotonoyl-CoA carboxylase subunit alpha,... 0.02 Orthogroups_2024-Update
Mp8g15290.1 No alias subunit alpha of methylcrotonoyl-CoA carboxylase complex 0.02 Orthogroups_2024-Update
Pp1s19_262V6 No alias methylcrotonoyl-coenzyme a carboxylase 1 0.06 Orthogroups_2024-Update
Seita.3G382100.1 No alias EC_6.4 ligase forming carbon-carbon bond & subunit alpha... 0.04 Orthogroups_2024-Update
evm.model.contig_2030.6 No alias (at1g03090 : 454.0) MCCA is the biotinylated subunit of... 0.04 Orthogroups_2024-Update
evm.model.contig_3438.3 No alias (q2qmg2|mcca_orysa : 381.0) Methylcrotonoyl-CoA... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004371 glycerone kinase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006071 glycerol metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006382 adenosine to inosine editing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016553 base conversion or substitution editing IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
BP GO:0019400 alditol metabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005481 BC-like_N 42 150
IPR005482 Biotin_COase_C 377 484
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 155 363
IPR000089 Biotin_lipoyl 671 737
No external refs found!