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  5. Brara.J00008.1

Brara.J00008.1


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002100_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00008.1
Cluster HCAA Clusters: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G088210.35 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
MA_1121588g0010 No alias (at1g02080 : 254.0) transcription regulators; FUNCTIONS... 0.02 Orthogroups_2024-Update
Pp1s41_25V6 No alias T7I23.15; transcriptional regulator-related [Arabidopsis... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR024557 CCR4-Not_Not1su_DUF3819 1289 1429
IPR032193 CNOT1_TTP_bind 640 810
IPR032191 CNOT1_CAF1_bind 941 1160
IPR007196 CCR4-Not_Not1_C 2001 2355
IPR032194 CNOT1_HEAT 467 613
No external refs found!