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  5. Brara.J00041.1

Brara.J00041.1


Description : circadian clock factor *(REVEILLE) & transcription factor *(REVEILLE)


Gene families : OG_42_0000380 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00041.1
Cluster HCAA Clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
78045 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_01132 No alias protein reveille 8 0.04 Orthogroups_2024-Update
A4A49_11843 No alias protein reveille 6 0.03 Orthogroups_2024-Update
At2g46830 No alias Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973] 0.03 Orthogroups_2024-Update
At5g02840 No alias LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5] 0.03 Orthogroups_2024-Update
Bradi1g29680 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00704.1 No alias transcription factor *(REVEILLE) 0.05 Orthogroups_2024-Update
Brara.J01819.1 No alias transcription factor *(REVEILLE) 0.04 Orthogroups_2024-Update
GRMZM2G029850 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G118693 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G170322 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G421256 No alias Function unknown 0.04 Orthogroups_2024-Update
Glyma.02G241000 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.03G177300 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G048500 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G031850.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
HORVU6Hr1G066000.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
HORVU7Hr1G121210.4 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Potri.015G030400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G083900 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s325_68V6 No alias lhy protein 0.02 Orthogroups_2024-Update
Seita.1G272700.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Sobic.004G281800.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Solyc02g036370 No alias Myb family transcription factor 0.03 Orthogroups_2024-Update
Solyc03g098320 No alias Myb transcription factor (AHRD V3.3 *** A0A072UBN0_MEDTR) 0.03 Orthogroups_2024-Update
Sopen02g011740 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 48 93
No external refs found!