1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J00092.1

Brara.J00092.1


Description : endo-beta-1,4-mannanase


Gene families : OG_42_0000309 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00092.1
Cluster HCAA Clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
A4A49_10051 No alias mannan endo-1,4-beta-mannosidase 4 0.02 Orthogroups_2024-Update
LOC_Os01g47400 No alias OsMan01 - Endo-Beta-Mannanase, expressed 0.03 Orthogroups_2024-Update
Pp1s5_225V6 No alias hydrolyzing o-glycosyl 0.03 Orthogroups_2024-Update
Seita.8G012300.1 No alias endo-beta-1,4-mannanase 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA 16Dec
BP GO:0071704 organic substance metabolic process IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001547 Glyco_hydro_5 70 354
No external refs found!