1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J00136.1

Brara.J00136.1


Description : E3 ubiquitin ligase *(NLA)


Gene families : OG_42_0001676 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001676_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00136.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
At1g02860 No alias E3 ubiquitin-protein ligase BAH1... 0.02 Orthogroups_2024-Update
Brara.D02300.1 No alias E3 ubiquitin ligase *(NLA) 0.03 Orthogroups_2024-Update
Kfl00030_0260 kfl00030_0260_v1.1 (at1g02860 : 135.0) Encodes a likely ubiquitin E3 ligase... 0.02 Orthogroups_2024-Update
MA_12120g0010 No alias (at2g38920 : 278.0) SPX (SYG1/Pho81/XPR1)... 0.04 Orthogroups_2024-Update
MA_54183g0010 No alias (at2g38920 : 285.0) SPX (SYG1/Pho81/XPR1)... 0.05 Orthogroups_2024-Update
Seita.9G153500.1 No alias E3 ubiquitin ligase *(NLA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 229 277
No external refs found!