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  5. Brara.J00161.1

Brara.J00161.1


Description : Unknown function


Gene families : OG_42_0008226 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008226_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00161.1
Cluster HCAA Clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
PSME_00004077-RA No alias (at1g03100 : 556.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.005G212400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Sobic.001G245000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 538 583
IPR002885 Pentatricopeptide_repeat 490 513
IPR002885 Pentatricopeptide_repeat 327 354
IPR002885 Pentatricopeptide_repeat 625 671
No external refs found!