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  5. Brara.J00213.1

Brara.J00213.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00213.1
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
93509 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Orthogroups_2024-Update
A4A49_08101 No alias protein indeterminate-domain 5, chloroplastic 0.04 Orthogroups_2024-Update
A4A49_23823 No alias zinc finger protein magpie 0.02 Orthogroups_2024-Update
A4A49_28163 No alias protein indeterminate-domain 4, chloroplastic 0.07 Orthogroups_2024-Update
Bradi2g08460 No alias C2H2 and C2HC zinc fingers superfamily protein 0.04 Orthogroups_2024-Update
Brara.C03495.1 No alias C2H2 subclass IDD transcription factor 0.05 Orthogroups_2024-Update
Brara.F03435.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.I00888.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
GRMZM5G828179 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
GRMZM5G884137 No alias indeterminate(ID)-domain 5 0.02 Orthogroups_2024-Update
Glyma.06G033300 No alias indeterminate(ID)-domain 2 0.05 Orthogroups_2024-Update
Glyma.06G287200 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.12G207200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G234500 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G070950.3 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
MA_92989g0010 No alias (at1g68130 : 365.0) indeterminate(ID)-domain 14 (IDD14);... 0.03 Orthogroups_2024-Update
Mp5g20530.1 No alias C2H2 zinc finger transcription factor 0.04 Orthogroups_2024-Update
PSME_00002842-RA No alias (at5g03150 : 321.0) JKD is a nuclear-localized putative... 0.03 Orthogroups_2024-Update
PSME_00020819-RA No alias (at2g01940 : 340.0) May be involved in an early event in... 0.03 Orthogroups_2024-Update
Sobic.006G180900.2 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Sopen01g001040 No alias Zinc finger, C2H2 type 0.02 Orthogroups_2024-Update
Sopen01g042900 No alias Zinc finger, C2H2 type 0.02 Orthogroups_2024-Update
Sopen03g040470 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update
Sopen06g031640 No alias Zinc finger, C2H2 type 0.02 Orthogroups_2024-Update
Sopen07g027520 No alias hypothetical protein 0.02 Orthogroups_2024-Update
evm.model.contig_535.4 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!