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  5. Brara.J00215.1

Brara.J00215.1


Description : Unknown function


Gene families : OG_42_0002864 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00215.1
Cluster HCAA Clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
444067 No alias prohibitin 2 0.05 Orthogroups_2024-Update
Glyma.09G173500 No alias prohibitin 2 0.05 Orthogroups_2024-Update
Glyma.11G109400 No alias prohibitin 2 0.04 Orthogroups_2024-Update
Glyma.12G207500 No alias prohibitin 2 0.04 Orthogroups_2024-Update
LOC_Os07g15880 No alias mitochondrial prohibitin complex protein 2, putative, expressed 0.03 Orthogroups_2024-Update
Mp1g10410.1 No alias Prohibitin-2, mitochondrial OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Potri.017G017400 No alias prohibitin 6 0.03 Orthogroups_2024-Update
Pp1s14_33V6 No alias mitochondrial prohibitin complex protein 2 0.02 Orthogroups_2024-Update
Seita.9G386200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G101000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc10g008140 No alias Prohibitin, putative (AHRD V3.3 *** B9RVS2_RICCO) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001107 Band_7 38 213
No external refs found!