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  5. Brara.J00241.1

Brara.J00241.1


Description : component *(uS19) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001901_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00241.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
172403 No alias Ribosomal protein S19 family protein 0.26 Orthogroups_2024-Update
At1g04270 No alias 40S ribosomal protein S15-1... 0.09 Orthogroups_2024-Update
At5g09510 No alias 40S ribosomal protein S15-4... 0.11 Orthogroups_2024-Update
Bradi1g05340 No alias Ribosomal protein S19 family protein 0.27 Orthogroups_2024-Update
Bradi1g55280 No alias Ribosomal protein S19 family protein 0.16 Orthogroups_2024-Update
Brara.H03058.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Brara.I05501.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Cre08.g360900 No alias Ribosomal protein S19 family protein 0.35 Orthogroups_2024-Update
Glyma.05G234800 No alias Ribosomal protein S19 family protein 0.06 Orthogroups_2024-Update
Glyma.07G269600 No alias Ribosomal protein S19 family protein 0.13 Orthogroups_2024-Update
Glyma.08G042300 No alias Ribosomal protein S19 family protein 0.08 Orthogroups_2024-Update
Glyma.17G004300 No alias Ribosomal protein S19 family protein 0.18 Orthogroups_2024-Update
HORVU2Hr1G057430.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Kfl00160_0050 kfl00160_0050_v1.1 (p31674|rs15_orysa : 187.0) 40S ribosomal protein S15 -... 0.14 Orthogroups_2024-Update
LOC_Os03g58430 No alias 40S ribosomal protein S15, putative, expressed 0.09 Orthogroups_2024-Update
LOC_Os07g08660 No alias 40S ribosomal protein S15, putative, expressed 0.07 Orthogroups_2024-Update
MA_14543g0010 No alias (p31674|rs15_orysa : 245.0) 40S ribosomal protein S15 -... 0.09 Orthogroups_2024-Update
Mp3g15000.1 No alias component RPS15 of SSU proteome 0.05 Orthogroups_2024-Update
PSME_00033145-RA No alias (p31674|rs15_orysa : 265.0) 40S ribosomal protein S15 -... 0.21 Orthogroups_2024-Update
Potri.005G219700 No alias Ribosomal protein S19 family protein 0.05 Orthogroups_2024-Update
Pp1s13_413V6 No alias 40s ribosomal protein s15 0.21 Orthogroups_2024-Update
Pp1s223_96V6 No alias 40s ribosomal protein s15 0.06 Orthogroups_2024-Update
Pp1s47_42V6 No alias 40s ribosomal protein s15 0.29 Orthogroups_2024-Update
Pp1s91_124V6 No alias 40s ribosomal protein s15 0.25 Orthogroups_2024-Update
Seita.2G059900.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Seita.3G185000.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.01 Orthogroups_2024-Update
Seita.9G053600.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Sobic.001G054900.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Sobic.002G056200.1 No alias component *(uS19) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Solyc02g082000 No alias Ribosomal protein S19 family protein (AHRD V3.3 *** AT5G09500.1) 0.35 Orthogroups_2024-Update
Solyc06g053820 No alias Chloroplast omega-3 fatty acid desaturase (AHRD V3.3 --*... 0.29 Orthogroups_2024-Update
Solyc09g083370 No alias Ribosomal protein S19 family protein (AHRD V3.3 *** AT5G09510.1) 0.19 Orthogroups_2024-Update
Sopen02g026630 No alias Ribosomal protein S19 0.37 Orthogroups_2024-Update
Sopen06g018940 No alias Ribosomal protein S19 0.38 Orthogroups_2024-Update
Sopen09g032290 No alias Ribosomal protein S19 0.09 Orthogroups_2024-Update
evm.model.contig_651.1 No alias (at5g09500 : 219.0) Ribosomal protein S19 family... 0.42 Orthogroups_2024-Update
evm.model.tig00020830.61 No alias (p31674|rs15_orysa : 236.0) 40S ribosomal protein S15 -... 0.27 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002222 Ribosomal_S19 50 135
No external refs found!