1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J00284.1

Brara.J00284.1


Description : regulatory GTPase (NOG1) of LSU processome


Gene families : OG_42_0003813 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003813_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00284.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Bradi1g46650 No alias Nucleolar GTP-binding protein 0.06 Orthogroups_2024-Update
HORVU7Hr1G033470.2 No alias regulatory GTPase (NOG1) of LSU processome 0.06 Orthogroups_2024-Update
Kfl00245_0010 kfl00245_0010_v1.... (at1g50920 : 781.0) Nucleolar GTP-binding protein;... 0.02 Orthogroups_2024-Update
MA_89272g0010 No alias (at1g50920 : 851.0) Nucleolar GTP-binding protein;... 0.03 Orthogroups_2024-Update
Mp6g16060.1 No alias NOG1 LSU processome regulatory GTPase 0.02 Orthogroups_2024-Update
Potri.001G258900 No alias Nucleolar GTP-binding protein 0.08 Orthogroups_2024-Update
Pp1s9_29V6 No alias nucleolar gtp-binding protein 0.02 Orthogroups_2024-Update
Seita.4G040700.1 No alias regulatory GTPase (NOG1) of LSU processome 0.1 Orthogroups_2024-Update
Sobic.010G073200.1 No alias regulatory GTPase (NOG1) of LSU processome 0.15 Orthogroups_2024-Update
Sopen01g032590 No alias NOGCT (NUC087) domain 0.02 Orthogroups_2024-Update
Sopen07g027710 No alias NOGCT (NUC087) domain 0.14 Orthogroups_2024-Update
evm.model.tig00021432.35 No alias (at1g50920 : 605.0) Nucleolar GTP-binding protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR010674 NOG1_Rossman_fold_dom 236 292
IPR012973 NOG_C 405 458
No external refs found!